TY  - JOUR
A1  - Abell, A N
A1  - Jordan, N V
A1  - Huang, W 
A1  - Prat, A 
A1  - Midland, A A
A1  - Johnson, N L
A1  - Granger, D A
A1  - Mieczkowski, P A
A1  - Perou, C M
A1  - Gomez, S M
A1  - Li, L 
A1  - Johnson, G L
T1  - MAP3K4/CBP-regulated H2B acetylation controls epithelial-mesenchymal transition in trophoblast stem cells.
Y1  - 2011/05/6
N1  - R833825
VL  - 8
IS  - 5
SP  - 525
EP  - 537
ER  - 


TY  - JOUR
A1  - Alves, V M
A1  - Muratov, E 
A1  - Fourches, D 
A1  - Strickland, J 
A1  - Kleinstreuer, N 
A1  - Andrade, C H
A1  - Tropsha, A 
T1  - Predicting chemically-induced skin reactions. Part I: QSAR models of skin sensitization and their application to identify potentially hazardous compounds.
Y1  - 2015/04/15
N1  - R833825
N1  - R835166
VL  - 284
IS  - 2
SP  - 262
EP  - 272
ER  - 


TY  - JOUR
A1  - Alves, V M
A1  - Muratov, E 
A1  - Fourches, D 
A1  - Strickland, J 
A1  - Kleinstreuer, N 
A1  - Andrade, C H
A1  - Tropsha, A 
T1  - Predicting chemically-induced skin reactions. Part II: QSAR models of skin permeability and the relationships between skin permeability and skin sensitization.
Y1  - 2015/04/15
N1  - R833825
N1  - R835166
VL  - 284
IS  - 2
SP  - 273
EP  - 280
ER  - 


TY  - JOUR
A1  - Artemenko, A G
A1  - Muratov, E N
A1  - Kuz'min, V E
A1  - Muratov, N N
A1  - Varlamova, E V
A1  - Kuz'mina, A V
A1  - Gorb, L G
A1  - Golius, A 
A1  - Hill, F C
A1  - Leszczynski, J 
A1  - Tropsha, A 
T1  - QSAR analysis of the toxicity of nitroaromatics in <em>Tetrahymena pyriformis</em>: structural factors and possible modes of action.
Y1  - 2011/07/
N1  - R833825
VL  - 22
IS  - 5-6
SP  - 575
EP  - 601
ER  - 


TY  - JOUR
A1  - Berginski, M E
A1  - Vitriol, E A
A1  - Hahn, K M
A1  - Gomez, S M
T1  - High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells.
Y1  - 2011/07/14
N1  - R833825
VL  - 6
IS  - 7
SP  - e22025 (13 pp.)
ER  - 


TY  - JOUR
A1  - Borysov, P 
A1  - Hannig, J 
A1  - Marron, J S
A1  - Muratov, E 
A1  - Fourches, D 
A1  - Tropsha, A 
T1  - Activity prediction and identification of mis-annotated chemical compounds using extreme descriptors.
Y1  - 2016/03/
N1  - R833825
N1  - R832720
JF  - JOURNAL OF CHEMOMETRICS
J1  - J CHEMOMETR
VL  - 30
IS  - 3
SP  - 99
EP  - 108
ER  - 


TY  - JOUR
A1  - Bradford, B U
A1  - Lock, E F
A1  - Kosyk, O 
A1  - Kim, S 
A1  - Uehara, T 
A1  - Harbourt, D 
A1  - DeSimone, M 
A1  - Threadgill, D W
A1  - Tryndyak, V 
A1  - Pogribny, I P
A1  - Bleyle, L 
A1  - Koop, D R
A1  - Rusyn, I 
T1  - Interstrain differences in the liver effects of trichloroethylene in a multistrain panel of inbred mice.
Y1  - 2011/03/
N1  - R833825
VL  - 120
IS  - 1
SP  - 206
EP  - 217
ER  - 


TY  - JOUR
A1  - Chaki, S P
A1  - Barhoumi, R 
A1  - Berginksi, M E
A1  - Sreenivasappa, H 
A1  - Trache, A 
A1  - Gomez, S M
A1  - Rivera, G M
T1  - Nck enables directional cell migration through the coordination of polarized membrane protrusion with adhesion dynamics.
Y1  - 2013/04/1
N1  - R833825
VL  - 126
IS  - Pt 7
SP  - 1637
EP  - 1649
ER  - 


TY  - JOUR
A1  - Chen, Z 
A1  - Lessey, E 
A1  - Berginski, M E
A1  - Cao, L 
A1  - Li, J 
A1  - Trepat, X 
A1  - Itano, M 
A1  - Gomez, S M
A1  - Kapustina, M 
A1  - Huang, C 
A1  - Burridge, K 
A1  - Truskey, G 
A1  - Jacobson, K 
T1  - Gleevec, an Abl family inhibitor, produces a profound change in cell shape and migration.
Y1  - 2013/01/2
N1  - R833825
VL  - 8
IS  - 1
SP  - e52233 (14 pp.)
ER  - 


TY  - JOUR
A1  - Choi, K 
A1  - Gomez, S M
T1  - Comparison of phylogenetic trees through alignment of embedded evolutionary distances.
Y1  - 2009/12/15
N1  - R833825
VL  - 10
SP  - 423
ER  - 


TY  - JOUR
A1  - Doolittle, J M
A1  - Gomez, S M
T1  - Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens.
Y1  - 2010/04/28
N1  - R833825
VL  - 7
SP  - 82 (15 pp.)
ER  - 


TY  - JOUR
A1  - Doolittle, J M
A1  - Gomez, S M
T1  - Mapping protein interactions between Dengue virus and its human and insect hosts.
Y1  - 2011/02/15
N1  - R833825
VL  - 5
IS  - 2
SP  - e954 (15 pp.)
ER  - 


TY  - JOUR
A1  - Duncan, J S
A1  - Whittle, M C
A1  - Nakamura, K 
A1  - Abell, A N
A1  - Midland, A A
A1  - Zawistowski, J S
A1  - Johnson, N L
A1  - Granger, D A
A1  - Jordan, N V
A1  - Darr, D B
A1  - Usary, J 
A1  - Kuan, P- F
A1  - Smalley, D M
A1  - Major, B 
A1  - He, X 
A1  - Hoadley, K A
A1  - Zhou, B 
A1  - Sharpless, N E
A1  - Perou, C M
A1  - Kim, W Y
A1  - Gomez, S M
A1  - Chen, X 
A1  - Jin, J 
A1  - Frye, S V
A1  - Earp, H S
A1  - Graves, L M
A1  - Johnson, G L
T1  - Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple negative breast cancer.
Y1  - 2012/04/13
N1  - R833825
VL  - 149
IS  - 2
SP  - 307
EP  - 321
ER  - 


TY  - JOUR
A1  - Fourches, D 
A1  - Barnes, J C
A1  - Day, N C
A1  - Bradley, P 
A1  - Reed, J Z
A1  - Tropsha, A 
T1  - Cheminformatics analysis of assertions mined from literature that describe drug-induced liver injury in different species.
Y1  - 2010/01/
N1  - R833825
N1  - R832720
JF  - CHEMICAL RESEARCH TOXICOLOGY
VL  - 23
IS  - 1
SP  - 171
EP  - 183
ER  - 


TY  - JOUR
A1  - Fourches, D 
A1  - Muratov, E 
A1  - Tropsha, A 
T1  - Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research.
Y1  - 2010/07/26
N1  - R833825
N1  - R832720
JF  - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1  - Journal of Chemical Information and Modeling
J2  - Journal of Chemical Information and Modeling
VL  - 50
IS  - 7
SP  - 1189
EP  - 1204
ER  - 


TY  - JOUR
A1  - Fourches, D 
A1  - Muratov, E 
A1  - Ding, F 
A1  - Dokholyan, N V
A1  - Tropsha, A 
T1  - Predicting binding affinity of CSAR ligands using both structure-based and ligand-based approaches.
Y1  - 2013/08/26
N1  - R833825
N1  - R832720
JF  - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1  - Journal of Chemical Information and Modeling
J2  - Journal of Chemical Information and Modeling
VL  - 53
IS  - 8
SP  - 1915
EP  - 1922
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Shabalin, A A
A1  - Lam, T- C
A1  - Wright, F A
A1  - Rusyn, I 
A1  - Nobel, A B
T1  - FastMap: fast eQTL mapping in homozygous populations.
Y1  - 2009/02/15
N1  - R833825
N1  - R832720
VL  - 25
IS  - 4
SP  - 482
EP  - 489
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Sypa, M 
A1  - Rusyn, I 
A1  - Wright, F A
A1  - Barry, W T
T1  - SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy.
Y1  - 2009/02/15
N1  - R833825
N1  - R832720
VL  - 25
IS  - 4
SP  - 541
EP  - 542
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Harrill, A H
A1  - Wright, F A
A1  - Threadgill, D W
A1  - Rusyn, I 
T1  - Replication and narrowing of gene expression quantitative trait loci using inbred mice.
Y1  - 2009/07/17
N1  - R833825
N1  - R832720
JF  - MAMMALIAN GENOME
J1  - MAMM GENOME
VL  - 20
IS  - 7
SP  - 437
EP  - 446
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Zhao, N 
A1  - Chesler, E J
A1  - Bradford, B U
A1  - Shabalin, A A
A1  - Yordanova, R 
A1  - Lu, L 
A1  - Rusyn, I 
T1  - Sex-specific gene expression in the BXD mouse liver.
Y1  - 2010/08/1
N1  - R833825
VL  - 42
IS  - 3
SP  - 456
EP  - 468
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Barry, W T
A1  - Nobel, A B
A1  - Rusyn, I 
A1  - Wright, F A
T1  - Heading down the wrong pathway: on the influence of correlation within gene sets.
Y1  - 2010/10/18
N1  - R833825
VL  - 11
SP  - 574
ER  - 


TY  - JOUR
A1  - Gatti, D M
A1  - Lu, L 
A1  - Williams, R W
A1  - Sun, W 
A1  - Wright, F A
A1  - Threadgill, D W
A1  - Rusyn, I 
T1  - MicroRNA expression in the livers of inbred mice.
Y1  - 2011/09/1
N1  - R833825
VL  - 714
IS  - 1-2
SP  - 126
EP  - 133
ER  - 


TY  - JOUR
A1  - Golbraikh, A 
A1  - Muratov, E 
A1  - Fourches, D 
A1  - Tropsha, A 
T1  - Data set modelability by QSAR.
Y1  - 2014/01/27
N1  - R833825
JF  - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1  - Journal of Chemical Information and Modeling
J2  - Journal of Chemical Information and Modeling
VL  - 54
IS  - 1
SP  - 1
EP  - 4
ER  - 


TY  - JOUR
A1  - Ham, J 
A1  - Sun, W 
T1  - Partial correlation matrix estimation using ridge penalty followed by thresholding and re-estimation.
Y1  - 2014/09/
N1  - R833825
JF  - BIOMETRICS
J1  - BIOMETRICS
VL  - 70
IS  - 3
SP  - 765
EP  - 773
ER  - 


TY  - JOUR
A1  - Harrill, A H
A1  - Ross, P K
A1  - Gatti, D M
A1  - Threadgill, D W
A1  - Rusyn, I 
T1  - Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel.
Y1  - 2009/07/
N1  - R833825
N1  - R832720
JF  - TOXICOLOGICAL SCIENCES
J1  - TOXICOL SCI
J2  - Toxicol.Sci.
J3  - Toxicological Sciences
VL  - 110
IS  - 1
SP  - 235
EP  - 243
ER  - 


TY  - JOUR
A1  - Herschlag, G 
A1  - Garcia, G J
A1  - Button, B 
A1  - Tarran, R 
A1  - Lindley, B 
A1  - Reinhardt, B 
A1  - Elston, T C
A1  - Forest, M G
T1  - A mechanochemical model for auto-regulation of lung airway surface layer volume.
Y1  - 2013/05/21
N1  - R833825
VL  - 325
SP  - 42
EP  - 51
ER  - 


TY  - JOUR
A1  - Kesseler, K J
A1  - Blinov, M L
A1  - Elston, T C
A1  - Kaufmann, W K
A1  - Simpson, D A
T1  - A predictive mathematical model of the DNA damage G2 checkpoint.
Y1  - 2013/03/7
N1  - R833825
VL  - 320
SP  - 159
EP  - 169
ER  - 


TY  - JOUR
A1  - Lee, S 
A1  - Wright, F A
A1  - Zou, F 
T1  - Control of population stratification by correlation-selected principal components.
Y1  - 2011/09/
N1  - R833825
VL  - 67
IS  - 3
SP  - 967
EP  - 974
ER  - 


TY  - JOUR
A1  - Lock, E F
A1  - Abdo, N 
A1  - Huang, R 
A1  - Xia, M 
A1  - Kosyk, O 
A1  - O'Shea, S H
A1  - Zhou, Y H
A1  - Sedykh, A 
A1  - Tropsha, A 
A1  - Austin, C P
A1  - Tice, R R
A1  - Wright, F A
A1  - Rusyn, I 
T1  - Quantitative high-throughput screening for chemical toxicity in a population-based <em>in vitro</em> model.
Y1  - 2012/04/
N1  - R833825
N1  - R835166
VL  - 126
IS  - 2
SP  - 578
EP  - 588
ER  - 


TY  - JOUR
A1  - Low, Y S
A1  - Sedykh, A Y
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays.
Y1  - 2014//
N1  - R833825
N1  - R832720
N1  - R835166
VL  - 14
IS  - 11
SP  - 1356
EP  - 1364
ER  - 


TY  - JOUR
A1  - Low, Y 
A1  - Uehara, T 
A1  - Minowa, Y 
A1  - Yamada, H 
A1  - Ohno, Y 
A1  - Urushidani, T 
A1  - Sedykh, A 
A1  - Muratov, E 
A1  - Kuz’min, V 
A1  - Fourches, D 
A1  - Zhu, H 
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - Predicting drug-induced hepatotoxicity using QSAR and toxicogenomics approaches.
Y1  - 2011/08/15
N1  - R833825
VL  - 24
IS  - 8
SP  - 1251
EP  - 1262
ER  - 


TY  - JOUR
A1  - Martinez, S M
A1  - Bradford, B U
A1  - Soldatow, V Y
A1  - Kosyk, O 
A1  - Sandot, A 
A1  - Witek, R 
A1  - Kaiser, R 
A1  - Stewart, T 
A1  - Amaral, K 
A1  - Freeman, K 
A1  - Black, C 
A1  - LeCluyse, E L
A1  - Ferguson, S S
A1  - Rusyn, I 
T1  - Evaluation of an <em>in vitro</em> toxicogenetic mouse model for hepatotoxicity.
Y1  - 2010/12/15
N1  - R833825
VL  - 249
IS  - 3
SP  - 208
EP  - 216
ER  - 


TY  - JOUR
A1  - Muratov, E N
A1  - Varlamova, E V
A1  - Artemenko, A G
A1  - Khristova, T 
A1  - Kuz'min, V E
A1  - Makarov, V A
A1  - Riabova, O B
A1  - Wutzler, P 
A1  - Schmidtke, M 
T1  - QSAR analysis of (biphenyloxy)propyl isoxazoles: agents against coxsackievirus B3.
Y1  - 2011/01/
N1  - R833825
N1  - R832720
JF  - FUTURE MEDICINAL CHEMISTRY
VL  - 3
IS  - 1
SP  - 15
EP  - 27
ER  - 


TY  - JOUR
A1  - Muratov, E N
A1  - Varlamova, E V
A1  - Artemenko, A G
A1  - Polishchuk, P G
A1  - Kuz'min, V E
T1  - Existing and developing approaches for QSAR analysis of mixtures.
Y1  - 2012/04/
N1  - R833825
N1  - R832720
JF  - MOLECULAR INFORMATICS
VL  - 31
IS  - 3-4
SP  - 202
EP  - 221
ER  - 


TY  - JOUR
A1  - Muratov, E N
A1  - Varlamova, E V
A1  - Artemenko, A G
A1  - Polishchuk, P G
A1  - Nikolaeva-Glomb, L 
A1  - Galabov, A S
A1  - Kuz'min, V E
T1  - QSAR analysis of poliovirus inhibition by dual combinations of antivirals.
Y1  - 2013/10/
N1  - R833825
N1  - R832720
JF  - STRUCTURAL CHEMISTRY
J1  - STRUCT CHEM
VL  - 24
IS  - 5
SP  - 1665
EP  - 1679
ER  - 


TY  - JOUR
A1  - O'Shea, S H
A1  - Schwarz, J 
A1  - Kosyk, O 
A1  - Ross, P K
A1  - Ham, J 
A1  - Wright, F A
A1  - Rusyn, I 
T1  - <em>In vitro</em> screening for population variability in chemical toxicity.
Y1  - 2011/02/
N1  - R833825
VL  - 119
IS  - 2
SP  - 398
EP  - 407
ER  - 


TY  - JOUR
A1  - Politi, R 
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - Prediction of binding affinity and efficacy of thyroid hormone receptor ligands using QSAR and structure-based modeling methods.
Y1  - 2014/10/1
N1  - R833825
N1  - R835166
JF  - TOXICOLOGY AND APPLIED PHARMACOLOGY
J1  - TOXICOL APPL PHARM
J2  - Toxicol.Appl.Pharmacol.
J3  - Toxicol Appl Pharmacol
J4  - Toxicology and Applied Pharmacology
VL  - 280
IS  - 1
SP  - 177
EP  - 189
ER  - 


TY  - JOUR
A1  - Rusyn, I 
A1  - Daston, G P
T1  - Computational toxicology: realizing the promise of the toxicity testing in the 21st century.
Y1  - 2010/08/
N1  - R833825
VL  - 118
IS  - 8
SP  - 1047
EP  - 1050
ER  - 


TY  - JOUR
A1  - Rusyn, I 
A1  - Gatti, D M
A1  - Wiltshire, T 
A1  - Kleeberger, S R
A1  - Threadgill, D W
T1  - Toxicogenetics: population-based testing of drug and chemical safety in mouse models.
Y1  - 2010/08/
N1  - R833825
VL  - 11
IS  - 8
SP  - 1127
EP  - 1136
ER  - 


TY  - JOUR
A1  - Rusyn, I 
A1  - Sedykh, A 
A1  - Low, Y 
A1  - Guyton, K Z
A1  - Tropsha, A 
T1  - Predictive modeling of chemical hazard by integrating numerical descriptors of chemical structures and short-term toxicity assay data.
Y1  - 2012/05/
N1  - R833825
N1  - R835166
VL  - 127
IS  - 1
SP  - 1
EP  - 9
ER  - 


TY  - JOUR
A1  - Sedykh, A 
A1  - Zhu, H 
A1  - Tang, H 
A1  - Zhang, L 
A1  - Richard, A 
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - Use of <em>in vitro</em> HTS-derived concentration-response data as biological descriptors improves the accuracy of QSAR models of <em>in vivo</em> toxicity.
Y1  - 2011/03/
N1  - R833825
VL  - 119
IS  - 3
SP  - 364
EP  - 370
ER  - 


TY  - JOUR
A1  - Soldatow, V Y
A1  - LeCluyse, E L
A1  - Griffith, L G
A1  - Rusyn, I 
T1  - <em>In vitro</em> models for liver toxicity testing.
Y1  - 2013/01/1
N1  - R833825
VL  - 2
IS  - 1
SP  - 23
EP  - 39
ER  - 


TY  - JOUR
A1  - Staab, J 
A1  - O’Connell, T M
A1  - Gomez, S M
T1  - Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS).
Y1  - 2010/03/9
N1  - R833825
VL  - 11
SP  - 123
ER  - 


TY  - JOUR
A1  - Strychalski, W 
A1  - Adalsteinsson, D 
A1  - Elston, T C
T1  - A cut-cell method for simulating spatial models of biochemical reaction networks in arbitrary geometries.
Y1  - 2010//
N1  - R833825
VL  - 5
IS  - 1
SP  - 31
EP  - 53
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Buck, M J
A1  - Patel, M 
A1  - Davis, I J
T1  - Improved ChIP-chip analysis by mixture model approach.
Y1  - 2009/06/7
N1  - R833825
JF  - BMC BIOINFORMATICS
VL  - 10
SP  - 173 (13 pp.)
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Xie, W 
A1  - Xu, F 
A1  - Grunstein, M 
A1  - Li, K- C
T1  - Dissecting nucleosome free regions by a segmental semi-Markov model.
Y1  - 2009/03/
N1  - R833825
JF  - PLOS ONE
J1  - PLOS One
VL  - 4
IS  - 3
SP  - e4721 (10 pp.)
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Wright, F A
A1  - Tang, Z 
A1  - Nordgard, S H
A1  - Van Loo, P 
A1  - Yu, T 
A1  - Kristensen, V N
A1  - Perou, C M
T1  - Integrated study of copy number states and genotype calls using high-density SNP arrays.
Y1  - 2009/09/
N1  - R833825
VL  - 37
IS  - 16
SP  - 5365
EP  - 5377
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Wright, F A
T1  - A geometric interpretation of the permutation <em>p</em>-value and its application in eQTL studies.
Y1  - 2010/08/3
N1  - R833825
VL  - 4
IS  - 2
SP  - 1014
EP  - 1033
ER  - 


TY  - JOUR
A1  - Sun, W 
T1  - A statistical framework for eQTL mapping using RNA-seq data.
Y1  - 2012/03/
N1  - R833825
VL  - 68
IS  - 1
SP  - 1
EP  - 11
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Li, L 
T1  - Multiple loci mapping via model-free variable selection.
Y1  - 2012/03/
N1  - R833825
JF  - BIOMETRICS
J1  - BIOMETRICS
VL  - 68
IS  - 1
SP  - 12
EP  - 22
ER  - 


TY  - JOUR
A1  - Sun, W 
A1  - Hu, Y 
T1  - eQTL mapping using RNA-seq data.
Y1  - 2013/05/1
N1  - R833825
VL  - 5
IS  - 1
SP  - 198
EP  - 219
ER  - 


TY  - JOUR
A1  - Sushko, I 
A1  - Novotarskyi, S 
A1  - Korner, R 
A1  - Pandey, A K
A1  - Cherkasov, A 
A1  - Li, J 
A1  - Gramatica, P 
A1  - Hansen, K 
A1  - Schroeter, T 
A1  - Muller, K R
A1  - Xi, L 
A1  - Liu, H 
A1  - Yao, X 
A1  - Oberg, T 
A1  - Hormozdiari, F 
A1  - Dao, P 
A1  - Sahinalp, C 
A1  - Todeschini, R 
A1  - Polishchuk, P 
A1  - Artemenko, A 
A1  - Kuz’min, V 
A1  - Martin, T M
A1  - Young, D M
A1  - Fourches, D 
A1  - Muratov, E 
A1  - Tropsha, A 
A1  - Baskin, I 
A1  - Horvath, D 
A1  - Marcou, G 
A1  - Muller, C 
A1  - Varnek, A 
A1  - Prokopenko, V V
A1  - Tetko, I V
T1  - Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set.
Y1  - 2010/12/27
N1  - R833825
JF  - JOURNAL OF CHEMICAL INFORMATION AND MODELING
J1  - Journal of Chemical Information and Modeling
J2  - Journal of Chemical Information and Modeling
VL  - 50
IS  - 12
SP  - 2094
EP  - 2111
ER  - 


TY  - JOUR
A1  - Wright, F A
A1  - Shabalin, A A
A1  - Rusyn, I 
T1  - Computational tools for discovery and interpretation of expression quantitative trait loci.
Y1  - 2012/02/
N1  - R833825
N1  - R835166
VL  - 13
IS  - 3
SP  - 343
EP  - 352
ER  - 


TY  - JOUR
A1  - Xia, K 
A1  - Shabalin, A A
A1  - Huang, S 
A1  - Madar, V 
A1  - Zhou, Y H
A1  - Wang, W 
A1  - Zou, F 
A1  - Sun, W 
A1  - Sullivan, P F
A1  - Wright, F A
T1  - seeQTL: a searchable database for human eQTLs.
Y1  - 2012/02/1
N1  - R833825
JF  - BIOINFORMATICS
J1  - BIOINFORMATICS
J2  - LECT NOTES COMPUT SC
J3  - METHOD BIOCHEM ANAL
VL  - 28
IS  - 3
SP  - 451
EP  - 452
ER  - 


TY  - JOUR
A1  - Xu, K 
A1  - Morgan, K T
A1  - Todd, G 
A1  - Elston, T C
A1  - Gomez, S M
T1  - A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis.
Y1  - 2011/12/
N1  - R833825
VL  - 7
IS  - 12
SP  - e1002272 (13 pp.)
ER  - 


TY  - JOUR
A1  - Zhang, L 
A1  - Sedykh, A 
A1  - Tripathi, A 
A1  - Zhu, H 
A1  - Afantitis, A 
A1  - Mouchlis, V D
A1  - Melagraki, G 
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - Identification of putative estrogen receptor-mediated endocrine disrupting chemicals using QSAR- and structure-based virtual screening approaches.
Y1  - 2013/10/1
N1  - R833825
N1  - R835166
VL  - 272
IS  - 1
SP  - 67
EP  - 76
ER  - 


TY  - JOUR
A1  - Zhang, X 
A1  - Huang, S 
A1  - Sun, W 
A1  - Wang, W 
T1  - Rapid and robust resampling-based multiple-testing correction with application in a genome-wide expression quantitative trait loci study.
Y1  - 2012/04/
N1  - R833825
JF  - GENETICS
J1  - GENETICS
VL  - 190
IS  - 4
SP  - 1511
EP  - 1520
ER  - 


TY  - JOUR
A1  - Zhou, Y- H
A1  - Xia, K 
A1  - Wright, F A
T1  - A powerful and flexible approach to the analysis of RNA sequence count data.
Y1  - 2011/10/1
N1  - R833825
VL  - 27
IS  - 19
SP  - 2672
EP  - 2678
ER  - 


TY  - JOUR
A1  - Zhou, Y- H
A1  - Barry, W T
A1  - Wright, F A
T1  - Empirical pathway analysis, without permutation.
Y1  - 2013/07/1
N1  - R833825
VL  - 14
IS  - 3
SP  - 573
EP  - 585
ER  - 


TY  - JOUR
A1  - Zhu, H 
A1  - Rusyn, I 
A1  - Richard, A 
A1  - Tropsha, A 
T1  - Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity.
Y1  - 2008/04/
N1  - R833825
N1  - R832720
VL  - 116
IS  - 4
SP  - 506
EP  - 513
ER  - 


TY  - JOUR
A1  - Zhu, H 
A1  - Ye, L 
A1  - Richard, A 
A1  - Golbraikh, A 
A1  - Wright, F A
A1  - Rusyn, I 
A1  - Tropsha, A 
T1  - A novel two-step hierarchical quantitative structure-activity relationship modeling work flow for predicting acute toxicity of chemicals in rodents.
Y1  - 2009/08/
N1  - R833825
N1  - R832720
JF  - ENVIRONMENTAL HEALTH PERSPECTIVES
J1  - ENVIRON HEALTH PERSP
J2  - Environ.Health Perspect.
J3  - Environ Health Perspect
J4  - Environmental Health Perspectives
VL  - 117
IS  - 8
SP  - 1257
EP  - 1264
ER  - 


TY  - JOUR
A1  - Zhu, H 
A1  - Martin, T M
A1  - Ye, L 
A1  - Sedykh, A 
A1  - Young, D M
A1  - Tropsha, A 
T1  - Quantitative structure-activity relationship modeling of rat acute toxicity by oral exposure.
Y1  - 2009/12/
N1  - R833825
N1  - R832720
JF  - CHEMICAL RESEARCH TOXICOLOGY
VL  - 22
IS  - 12
SP  - 1913
EP  - 1921
ER  - 


TY  - JOUR
A1  - Zou, F 
A1  - Lee, S 
A1  - Knowles, M R
A1  - Wright, F A
T1  - Quantification of population structure using correlated SNPs by shrinkage principal components.
Y1  - 2010/06/
N1  - R833825
VL  - 70
IS  - 1
SP  - 9
EP  - 22
ER  -